This is a major taboo being broken, with the call of for the indictment of the head of the Central Command, General Ruweini (considered third most powerful person on SCAF) and the head of the military police:
Five human rights organizations said today that the past three days' brutal attacks on demonstrators, carried out by the Interior Ministry's security forces and military police forces under the Supreme Council of the Armed Forces in Cairo, Alexandria, Suez, Ismailiya, Assyut, and other cities, constitute criminal offences. These offences are without a statute of limitations and the perpetrators and instigators must be brought before criminal trials.
The Egyptian Initiative for Personal Rights, Hisham Mubarak Law Centre, Cairo Institute for Human Rights Studies, El-Nadim Centre for the Rehabilitation of Victims of Violence, and the Arabic Network for Human Rights Information pledged to continue to identify the civilian and military officials involved in killing demonstrators, bursting their eyes and breaking their bones and skulls. These crimes have been extensively documented by these organizations and by the media over the past few days.
The signatory organizations stated that the list of officials it plans to prosecute so far includes: General Mansour al-Essawi, Minister of the Interior; General Sami Sidhom, Assistant Interior Minister for the Security Sector; General Emad al-Din al-Wakil, Assistant Interior Minister for the Central Security Forces; General Hamdy Badeen, head of the military police; and General Hasan al-Ruwaini, commander of the central military district. This is in addition to other civilian and military officials in a number of other cities which have seen similar criminal offences against demonstrators.
Here's the full press release.