The Brotherhood leadership, according to sources who spoke to Ahram Online, is hoping to clinch the top position in the next government, should Mubarak-era premier and presidential finalist Ahmed Shafiq beat Brotherhood candidate Mohamed Mursi in this week's runoff vote.
"Deep down, nobody is expecting Mursi to win; it has become very clear that the SCAF is supporting Shafiq," said a Muslim Brotherhood source. "We don’t want to get into a confrontation, but we want to make sure that Shafiq won't be running the state in the absence of revolutionary forces – this is why we want a strong presence in the next government."
A former associate of El-Shater who previously defected from the Brotherhood told Ahram Online: "Khairat El-Shater is a realistic and pragmatic man. He knows that Mursi's electoral prospects are slim, and that the chances of the Brotherhood making its presence felt will be much better if it comes via the government rather than the presidency, in which case Mursi would be confronted by all top state bodies, including the SCAF itself."
According to this article, the chief connection here is between Gen. Sami Enan and al-Shater. When I met Shater after the first round, he seemed depressed and fatalistic about how the election is rigged against the MB. But Shafiq's promise to appoint a MB-led cabinet (which he stands by despite his repeated attacks on the group as a force for darkness) and SCAF's encouragement of such a step makes it likely that the MB will simply live with the cabinet, and especially the PM's position, if it loses the presidential election.
All of this confirms my take on the Morsi-Shafiq runoff: it's an existential crisis for the felool — the remnants of the NDP, establishment power networks, parts of the security services — which stand to lose all access and be subject to further judicial reckoning if Morsi wins. But it's not as much as an existential crisis for the MB if Shafiq wins, because they don't believe Shafiq will institute a crackdown against them (others will suffer first), because they think they will retain control of parliament, and because they think ultimately they can deal with Shafiq and SCAF. I think that's a miscalculation, but it's coherent with their past behavior and deal-making inclinations.