A second, more accurate interpretation is suggested by a new analogy to replace that of the deadly cobra and mongoose to characterize relations between the military and the Muslim Brotherhood. It is that the lion of the military and the lamb of the Brotherhood will lie down together, but as separate, distinct beings each with its own purpose. While there are certainly already fellow travelers of the Muslim Brotherhood in the officer corps and many officers who will see advantage now in associating themselves with it or at least not opposing it, the corps as a whole is not about to become the striking arm of the Brotherhood. Its primary incentive for facilitating Tantawi's removal was not Islamist commitment, but accumulated dissatisfaction with the Field Marshal's debasement of their institution and its capacities, triggered by his inept political maneuvering. The agreement between key officers, on the one hand, and Morsi and his allies, on the other, will have been based on a division of roles and responsibilities in which the military as an institution continues to be the dominant actor in the formation and implementation of national security policies. The assumption underlying the agreement will have been that the re-professionalization of the military and the exercise of constitutional power by the civilian government, presently dominated by the Brotherhood, are compatible, indeed reinforcing objectives. Both sides, in other words, will have professed their respect for constitutional, legal, and professional norms and their centrality to the new relationship. The lion and the lamb, in short, have opted for coexistence, rather than a struggle akin to the cobra and mongoose fight in which one would ultimately destroy the other.
Whether this agreement proves to be durable or not will depend on numerous factors, key being respect for it by either side. If the Brotherhood seeks to impose its will on the state and nation, including the military, it will meet a reaction from the officer corps. This, and even the threat of it, combined with ongoing and probably intensifying civilian opposition, is likely to cause the Brotherhood to move carefully, whatever its real intentions. While a new form of anti-democratic political influence over the military could still result, were the Brotherhood actually to consolidate total power, the removal of the Mubarak military high command was the necessary, if not sufficient condition to begin the long march to institutionalized, civilian, democratic control of Egypt's armed forces. For that reason alone it is a positive step, if one with other potential dangers.
He has good stuff in there about the steps taken to secure himself by Morsi — getting control of Central Security Forces, sacking Mowafi and Ruweini, etc.
I have a column coming out in The National tomorrow, just written this morning, that takes a similar view and offers some advice for the rest of the political actors in this.